PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000577111
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 434aa    MW: 46757.7 Da    PI: 8.3697
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000577111genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.73e-115277227
                   -S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                   +++ C+++ rtG C++G++C+F+H+p
  MDP0000577111 52 GEPDCSYYIRTGLCRFGATCRFNHPP 77
                   5799********************97 PP

2zf-CCCH31.92.2e-10107126827
                    GGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   8 ffartGtCkyGdrCkFaHgp 27 
                    ++++tGtCk+G++CkF+H++
  MDP0000577111 107 YYLKTGTCKFGATCKFHHPR 126
                    9*****************96 PP

3zf-CCCH352.3e-11151173527
                    --SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                    +C +++rtG+Ck+G++CkF+H++
  MDP0000577111 151 ECAYYLRTGQCKFGGTCKFHHPQ 173
                    7********************97 PP

4zf-CCCH38.91.4e-12308334127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    +++++C+f+++tG Ck+G+ C+F+H++
  MDP0000577111 308 PGQPECQFYMKTGDCKFGAVCRFHHPM 334
                    5789*********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.2675078IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-55077IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-85277IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-55578IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-45676IPR000571Zinc finger, CCCH-type
SMARTSM003560.06498126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.211103127IPR000571Zinc finger, CCCH-type
PfamPF006428.9E-8107126IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-4107126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.389146174IPR000571Zinc finger, CCCH-type
SMARTSM003565.8E-4146173IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-6150174IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-9151173IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.361307335IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-6307334IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-9309334IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-5311337IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4313335IPR000571Zinc finger, CCCH-type
PfamPF146083.7355364No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MDFDAGIPMS RAAAPVTDAP SLSPALTQDA MWPMNLRSSE TLEAGGYPER TGEPDCSYYI  60
RTGLCRFGAT CRFNHPPNRK LAIAAARMKG EFPERIGQPE CQACISYYLK TGTCKFGATC  120
KFHHPRDKAG IAGRVALNIL GYPLRPQNEI ECAYYLRTGQ CKFGGTCKFH HPQPTNMMVS  180
VRGSPVYPTV QSPTTPGQQS YAGGVTNWSR ASFIPSPRWQ APSNYAPLIV PQGVVSVPGW  240
NAYSGQLGSV SSAESQQQTA GNSQMYGTSR QGEPENSGSQ GGFSPYRSGS IPVGFYALQR  300
ENVFPERPGQ PECQFYMKTG DCKFGAVCRF HHPMERLIPA PDCVLSPIGL PLRPFGPSCK  360
FDHPMGIFTY GLSASSSADA PARRLLGSTS GAASLNLASS GLVEAGSANP RRVSLSEPRQ  420
MPSAEDNNID REE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.239660.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818089e-38LN681808.1 Cucumis melo genomic scaffold, anchoredscaffold00012.
GenBankLN7132569e-38LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008359919.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLM5VZ660.0M5VZ66_PRUPE; Uncharacterized protein
STRINGVIT_04s0023g00370.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53213355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-168zinc finger protein 1